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In the PubMed database, full name search is available for publications after 2002. Google Scholar & ORCID

Last 5 years

[2025]

Baek, Seungwoo, Bogun Kim, Duleepa Pathiraja, and In-Geol Choi. “Development of a Transposon-Based Genome Engineering Toolkit for Efficient and Adaptable Genetic Modifications in Wolfiporia cocos”. In: ACS SYNTHETIC BIOLOGY 14.4 (2025), pp. 1152-1160. DOI: 10.1021/acssynbio.4c00766. PMID: 40173021.

Baek, Seungwoo, Hyeryeong Lee, Yoo Seok Lee, In Seop Chang, and In-Geol Choi. “A Redox-Enzyme Integrated Microbial Fuel Cell Design Using the Surface Display System in Shewanella oneidensis MR-1”. In: ACS APPLIED MATERIALS & INTERFACES 17.1 (2025), pp. 1167-1178. DOI: 10.1021/acsami.4c16868. PMID: 39715327.

Oh, Soyoung, Jiyeong Jeong, Byeonghyeok Park, Byeongchan Kang, Ji-Yeon Kim, Sehoon Park, Dong-Hun Lee, Seunghyeon Jung, Mungyu Lee, Wonjung Lee, Muhammad Yasin, Junhyeok Seo, Zee-Yong Park, Kyung-Hoon Shin, Volker Müller, et al. “Acetogenesis to ethanologenesis: facilitating NADH oxidation via reductive acetate uptake”. In: TRENDS IN BIOTECHNOLOGY 43.3 (2025), pp. 696-714. DOI: 10.1016/j.tibtech.2024.11.008. PMID: 39794209.

[2024]

Han, Na Ree, Sora Yu, Jung A Byun, Eun Ju Yun, Seongwon Cheon, Seongbong Song, Sangmin Shim, In-Geol Choi, Sung-Ho Lee, and Kyoung Heon Kim. “Evolution-aided improvement of the acid tolerance of Levilactobacillus brevis and its application in sourdough fermentation”. In: FOOD RESEARCH INTERNATIONAL (OTTAWA, ONT.) 190 (2024), p. 114584. DOI: 10.1016/j.foodres.2024.114584. PMID: 38945604.

Kim, Bogun, Ji Yu Heo, Xiaoyue Xu, Hyunju Lee, Duleepa Pathiraja, Jae-Young Kim, Yi Hyun Choi, In-Geol Choi, and Sae Hun Kim. “Complete genome sequence of candidate probiotic Limosilactobacillus fermentum KUFM407”. In: JOURNAL OF ANIMAL SCIENCE AND TECHNOLOGY 66.4 (2024), pp. 859-862. DOI: 10.5187/jast.2023.e122. PMID: 39165743.

Kwon, Dae Young, Sang Hyun Lee, Jong Seong Khim, Xiaoyue Xu, Bogun Kim, In-Geol Choi, Yeonjae Yoo, and Jae-Jin Kim. “Jannaschia ovalis sp. nov., a marine bacterium isolated from a tidal flat sediment in the Republic of Korea”. In: ANTONIE VAN LEEUWENHOEK 118.1 (2024), p. 36. DOI: 10.1007/s10482-024-02044-x. PMID: 39612060.

[2023]

Eor, Ju Young, Chul Sang Lee, Sung Ho Moon, Ju Young Cheon, Duleepa Pathiraja, Byeonghyeok Park, Min Jae Shin, Jae-Young Kim, Sangjong Kim, Youngbae Noh, Yunhan Kim, In-Geol Choi, and Sae Hun Kim. “Effect of Probiotic-Fortified Infant Formula on Infant Gut Health and Microbiota Modulation”. In: FOOD SCIENCE OF ANIMAL RESOURCES 43.4 (2023), pp. 659-673. DOI: 10.5851/kosfa.2023.e26. PMID: 37484007.

Kim, Bogun, Kiyeop Kim, Xiaoyue Xu, Hyunju Lee, Duleepa Pathiraja, Dong-June Park, In-Geol Choi, and Sejong Oh. “Complete genome and two plasmids sequences of Lactiplantibacillus plantarum L55 for probiotic potentials”. In: JOURNAL OF ANIMAL SCIENCE AND TECHNOLOGY 65.6 (2023), pp. 1341-1344. DOI: 10.5187/jast.2023.e37. PMID: 38616876.

Kim, Bogun, Ziayo Meng, Xiaoyue Xu, Seungwoo Baek, Duleepa Pathiraja, In-Geol Choi, and Sejong Oh. “Complete genome sequence of Limosilactobacillus fermentum JNU532 as a probiotic candidate for the functional food and feed supplements”. In: JOURNAL OF ANIMAL SCIENCE AND TECHNOLOGY 65.1 (2023), pp. 271-274. DOI: 10.5187/jast.2022.e91. PMID: 37093930.

Kim, Chul-Hwan, Yeonjae Yoo, Jong Seong Khim, Xiaoyue Xu, Bogun Kim, In-Geol Choi, and Jae-Jin Kim. “Sphingomicrobium sediminis sp. nov., isolated from marine sediment in the Republic of Korea”. In: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 73.4 (2023). DOI: 10.1099/ijsem.0.005847. PMID: 37074128.

Kim, Ji-Yeon, Byeongchan Kang, Soyoung Oh, Yeji Gil, In-Geol Choi, and In Seop Chang. “Genome-Based Reclassification of Strain KIST612, Previously Classified as Eubacterium limosum, into a New Strain of Eubacterium callanderi”. In: JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY 33.8 (2023), pp. 1084-1090. DOI: 10.4014/jmb.2304.04011. PMID: 37218441.

Lee, Sang Hyun, Yeonjae Yoo, Dae Young Kwon, Jong Seong Khim, Xiaoyue Xu, Bogun Kim, In-Geol Choi, and Jae-Jin Kim. “Tenacibaculum tangerinum sp. nov., isolated from a tidal flat sediment”. In: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 73.12 (2023). DOI: 10.1099/ijsem.0.006203. PMID: 38117208.

Pathiraja, Duleepa, Junghwan Cho, Junsung Kim, and In-Geol Choi. “Metabarcoding of eDNA for tracking the floral and geographical origins of bee honey”. In: FOOD RESEARCH INTERNATIONAL (OTTAWA, ONT.) 164 (2023), p. 112413. DOI: 10.1016/j.foodres.2022.112413. PMID: 36737994.

Pathiraja, Duleepa, Junghwan Cho, Peter Stougaard, and In-Geol Choi. “Enzymatic Process for the Carrageenolytic Bioconversion of Sulfated Polygalactans into β-Neocarrabiose and 3,6-Anhydro-d-galactose”. In: JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 71.1 (2023), pp. 635-645. DOI: 10.1021/acs.jafc.2c06972. PMID: 36580413.

Pathiraja, Duleepa, Byeonghyeok Park, Bogun Kim, Peter Stougaard, and In-Geol Choi. “Constructing Marine Bacterial Metabolic Chassis for Potential Biorefinery of Red Algal Biomass and Agaropectin Wastes”. In: ACS SYNTHETIC BIOLOGY 12.6 (2023), pp. 1782-1793. DOI: 10.1021/acssynbio.3c00063. PMID: 37265394.

[2022]

Kim, Bogun, Byoungnam Min, Jae-Gu Han, Hongjae Park, Seungwoo Baek, Subin Jeong, and In-Geol Choi. “Draft Genome Sequence of the Reference Strain of the Korean Medicinal Mushroom Wolfiporia cocos KMCC03342”. In: MYCOBIOLOGY 50.4 (2022), pp. 254-257. DOI: 10.1080/12298093.2022.2109874. PMID: 36158046.

Kim, Chul-Hwan, Yeonjae Yoo, Dongjun Kim, Jong Seong Khim, Duleepa Pathiraja, Bogun Kim, In-Geol Choi, and Jae-Jin Kim. “Aurantiacibacter sediminis sp. nov., a marine bacterium isolated from a tidal flat”. In: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 72.6 (2022). DOI: 10.1099/ijsem.0.005406. PMID: 35666678.

Kim, Hye Won, Byeong Hyeok Park, Hongjae Park, Beom Chang Baek, In-Geol Choi, and Min Suk Rhee. “Corrigendum to "Low-shear modeled microgravity affects metabolic networks of Escherichia coli O157:H7 EDL933: Further insights into space-microbiology" [Food Res. Int. 154 (2022) 111013]”. In: FOOD RESEARCH INTERNATIONAL (OTTAWA, ONT.) 156 (2022), p. 111276. DOI: 10.1016/j.foodres.2022.111276. PMID: 35651099.

Marian, Ioana M, Peter Jan Vonk, Ivan D Valdes, Kerrie Barry, Benedict Bostock, Akiko Carver, Chris Daum, Harry Lerner, Anna Lipzen, Hongjae Park, Margo B P Schuller, Martin Tegelaar, Andrew Tritt, Jeremy Schmutz, Jane Grimwood, et al. “The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune”. In: MBIO 13.3 (2022), p. e0062822. DOI: 10.1128/mbio.00628-22. PMID: 35604096.

Pathiraja, Duleepa, June Wee, Kijong Cho, and In-Geol Choi. “Correction to: Soil environment reshapes microbiota of laboratory-maintained Collembola during host development”. In: ENVIRONMENTAL MICROBIOME 17.1 (2022), p. 20. DOI: 10.1186/s40793-022-00414-4. PMID: 35468816.

— “Soil environment reshapes microbiota of laboratory-maintained Collembola during host development”. In: ENVIRONMENTAL MICROBIOME 17.1 (2022), p. 16. DOI: 10.1186/s40793-022-00411-7. PMID: 35382887.

Wu, Gang, Shingo Miyauchi, Emmanuelle Morin, Alan Kuo, Elodie Drula, Torda Varga, Annegret Kohler, Bang Feng, Yang Cao, Anna Lipzen, Christopher Daum, Hope Hundley, Jasmyn Pangilinan, Jenifer Johnson, Kerrie Barry, et al. “Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales”. In: THE NEW PHYTOLOGIST 233.3 (2022), pp. 1383-1400. DOI: 10.1111/nph.17858. PMID: 34767630.

Yoo, Yeonjae, Hanbyul Lee, Jong Seong Khim, Xiaoyue Xu, Bogun Kim, In-Geol Choi, and Jae-Jin Kim. “Halomonas getboli sp. nov., a halotolerant bacteria isolated from a salt flat”. In: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 72.12 (2022). DOI: 10.1099/ijsem.0.005634. PMID: 36748432.

[2021]

Choi, Hong Il, Sung-Won Hwang, Jongrae Kim, Byeonghyeok Park, EonSeon Jin, In-Geol Choi, and Sang Jun Sim. “Augmented CO2 tolerance by expressing a single H+-pump enables microalgal valorization of industrial flue gas”. In: NATURE COMMUNICATIONS 12.1 (2021), p. 6049. DOI: 10.1038/s41467-021-26325-5. PMID: 34663809.

Kang, Hyunsoo, Byeonghyeok Park, Soyoung Oh, Duleepa Pathiraja, Ji-Yeon Kim, Seunghyeon Jung, Jiyeong Jeong, Minseok Cha, Zee-Yong Park, In-Geol Choi, and In Seop Chang. “Metabolism perturbation Causedby the overexpression of carbon monoxide dehydrogenase/Acetyl-CoA synthase gene complex accelerated gas to acetate conversion rate ofEubacterium limosumKIST612”. In: BIORESOURCE TECHNOLOGY 341 (2021), p. 125879. DOI: 10.1016/j.biortech.2021.125879. PMID: 34523550.

Kim, Dongjun, Yeonjae Yoo, Jong Seong Khim, Dongmin Yang, Duleepa Pathiraja, Byeonghyeok Park, In-Geol Choi, and Jae-Jin Kim. “Altererythrobacter lutimaris sp. nov., a marine bacterium isolated from a tidal flat and reclassification of Altererythrobacter deserti, Altererythrobacter estronivorus and Altererythrobacter muriae as Tsuneonella deserti comb. nov., Croceicoccus estronivorus comb. nov. and Alteripontixanthobacter muriae comb. nov”. In: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 71.12 (2021). DOI: 10.1099/ijsem.0.005134. PMID: 34874248.

Ko, Hyeok-Jin, Heesang Song, and In-Geol Choi. “Development of a Novel Cell Surface Attachment System to Display Multi-Protein Complex Using the Cohesin-Dockerin Binding Pair”. In: JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY 31.8 (2021), pp. 1183-1189. DOI: 10.4014/jmb.2105.05022. PMID: 34226404.

Kwak, Min-Jin, Min-Young Park, Yong-Soon Choi, Junghwan Cho, Duleepa Pathiraja, Jonggun Kim, Hanbae Lee, In-Geol Choi, and Kwang-Youn Whang. “Dietary sophorolipid accelerates growth by modulation of gut microbiota population and intestinal environments in broiler chickens”. In: JOURNAL OF ANIMAL SCIENCE AND BIOTECHNOLOGY 12.1 (2021), p. 81. DOI: 10.1186/s40104-021-00606-x. PMID: 34247658.

Oh, Youn-Lee, In-Geol Choi, Kab-Yeul Jang, Min-Seek Kim, Min Ji Oh, and Ji-Hoon Im. “SNP-Based Genetic Linkage Map and Quantitative Trait Locus Mapping Associated with the Agronomically Important Traits of Hypsizygus marmoreus”. In: MYCOBIOLOGY 49.6 (2021), pp. 589-598. DOI: 10.1080/12298093.2021.2018784. PMID: 35035250.

Pathiraja, Duleepa, Line Christiansen, Byeonghyeok Park, Mikkel Schultz-Johansen, Geul Bang, Peter Stougaard, and In-Geol Choi. “A Novel Auxiliary Agarolytic Pathway Expands Metabolic Versatility in the Agar-Degrading Marine Bacterium Colwellia echini A3T”. In: APPLIED AND ENVIRONMENTAL MICROBIOLOGY 87.12 (2021), p. e0023021. DOI: 10.1128/AEM.00230-21. PMID: 33811026.

Pyo, Min Cheol, In-Geol Choi, and Kwang-Won Lee. “Transcriptome Analysis Reveals the AhR, Smad2/3, and HIF-1α Pathways as the Mechanism of Ochratoxin A Toxicity in Kidney Cells”. In: TOXINS 13.3 (2021). DOI: 10.3390/toxins13030190. PMID: 33800744.

Yoo, Yeonjae, Dongjun Kim, Hanbyul Lee, Jong Seong Khim, Bogun Kim, Dongmin Yang, Duleepa Pathiraja, In-Geol Choi, and Jae-Jin Kim. “Novosphingobium aureum sp. nov., a marine bacterium isolated from salt flat sediment”. In: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 71.7 (2021). DOI: 10.1099/ijsem.0.004930. PMID: 34328829.